有谁会用stock splitss tree吗

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相关热词相关学者SplitsTree graph visualising strain assignments and similarities...
ContextAn overview on typing data is provided in Table 3 and in Figure 1. Therefore, clonal complexes and strains as well as their abundances are only discussed shortly here.In order to visualise similarities (although not necessarily true phylogenetic relationships) between the hybridisation profiles, a network tree (Figure 1) was constructed using SplitsTree software [13]. Array hybridisation profiles of the tested isolates (see File S1) were converted into a series of ‘sequences’. Each position in this ‘sequence’, i.e., each target gene or allele, could have a value of ‘positive’ (‘C’), ‘negative’ (‘G’) or ‘ambiguous’ (‘A’). These ‘sequences’ were used with SplitsTree version 4.11.3 on default settings (characters transformation: uncorrected P/ignore ambiguous states, distance transformation: Neighbour-Net, and variance: ordinary least squares).A total of 15.31% of the tested isolates proved to be mecA-positive. The occurrence of mecA across the different lineages is shown in Figure 1. SCCmec III was the most common type of SCCmec element, found in 27 isolates (all belonging to ST239). All these isolates were also positive for merA/B, indicating the presence of a composite SCCmec III/SCCmer element as previously described [14]. Two of these isolates harboured additional ccrA/B-4 genes. SCCmec IV was detected in 15 isolates that were assigned to the “USA300” strain. Two additional isolates were identical except for a lack of ccr genes. SCCmec V was found only once in a CC5 strain.An overview on abundances of virulence-associated genes is given in Table 2. Most notably, half (50.00%) of the tested isolates were PVL-positive (Figure 1).Join ResearchGate to access over 30 million figures and 100+ million publications – all in one place.Feb 2014PLoS ONE[...]ArticleFull-text availableDec 2017BMC GENOMICSArticleApr 2016EUR J CLIN MICROBIOLArticleFull-text availableJun 2015ArticleFull-text availableJan 2015J CLIN MICROBIOLArticleJul 2015J DAIRY SCIArticleFull-text availableJan 2016CLIN MICROBIOL INFECShow moreAdd comment 上传我的文档
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splitstree4 0 computation of phylogenetic tree and networks
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